Development of a chemical scaffold for inhibiting nonribosomal peptide synthetases in live bacterial cells

• Fumihiro Ishikawa,
• Sho Konno,
• Hideaki Kakeya and
• Genzoh Tanabe

Beilstein J. Org. Chem. 2024, 20, 445–451, doi:10.3762/bjoc.20.39

• cyanomethyl (7) groups at the 2′-OH. The synthetic routes to compounds 4–9 are shown in Scheme 1. The 2′-OH of adenosine was alkylated with several alkyl halides in the presence of sodium hydride (NaH). Both the 3′-OH and 5′-OH groups of compounds 10a–e were protected by a TBS group, followed by the selective

Synthesis of π-conjugated polycyclic compounds by late-stage extrusion of chalcogen fragments

• Aissam Okba,
• Pablo Simón Marqués,
• Kyohei Matsuo,
• Naoki Aratani,
• Hiroko Yamada,
• Gwénaël Rapenne and
• Claire Kammerer

Beilstein J. Org. Chem. 2024, 20, 287–305, doi:10.3762/bjoc.20.30

• exploited in the previous thiepine synthesis (see Scheme 5). Installation of the imide groups was performed first and dianhydride 11 was thus treated with 2,4,6-trimethylaniline to afford the corresponding bisimide 32 in good yield. Subsequently, reaction with α-benzaldoxime in the presence of sodium

• hydride resulted in the formation of the oxepine ring by a double substitution reaction, to yield the desired dinaphthooxepine 33. The non-planar character of dinaphthooxepine bisimides was confirmed by X-ray crystal structure, and stability towards thermal or photoactivation was also established. Cyclic

Aromatic systems with two and three pyridine-2,6-dicarbazolyl-3,5-dicarbonitrile fragments as electron-transporting organic semiconductors exhibiting long-lived emissions

• Karolis Leitonas,
• Brigita Vigante,
• Dmytro Volyniuk,
• Audrius Bucinskas,
• Pavels Dimitrijevs,
• Sindija Lapcinska,
• Pavel Arsenyan and
• Juozas Vidas Grazulevicius

Beilstein J. Org. Chem. 2023, 19, 1867–1880, doi:10.3762/bjoc.19.139

• –7.79 (m, 2H), 7.63–7.50 (m, 2H); GC–MS: 442 [M]+. 2,6-Bis(3,6-di-tert-butylcarbazol-9-yl)-4-(4-bromophenyl)pyridine-3,5-dicarbonitrile (4). Sodium hydride (60% oil dispersion, 180 mg, 5.36 mmol, 3.2 equiv) was added to THF (15 mL) under Ar atmosphere. Then, 3,6-di-tert-butyl-9H-carbazole (1.40 g, 5.3

Synthesis of ether lipids: natural compounds and analogues

• Marco Antônio G. B. Gomes,
• Alicia Bauduin,
• Chloé Le Roux,
• Romain Fouinneteau,
• Wilfried Berthe,
• Mathieu Berchel,
• Hélène Couthon and
• Paul-Alain Jaffrès

Beilstein J. Org. Chem. 2023, 19, 1299–1369, doi:10.3762/bjoc.19.96

• precursor. The reaction started with the S-alkylation of thioglycerol by bromo- or iodoalkyl chains as previously reported [131]. Then, the primary alcohol was protected with a trityl group to form 26.1 (Figure 26A). The secondary alcohol was first deprotonated with sodium hydride and alkylated with

Organic thermally activated delayed fluorescence material with strained benzoguanidine donor

• Alexander C. Brannan,
• Elvie F. P. Beaumont,
• Nguyen Le Phuoc,
• George F. S. Whitehead,
• Mikko Linnolahti and
• Alexander S. Romanov

Beilstein J. Org. Chem. 2023, 19, 1289–1298, doi:10.3762/bjoc.19.95

• deprotonation the latter with sodium hydride base. The compound shows poor solubility in most common organic solvents with moderate solubility in dichloromethane, 1,2-dichlorobenzene and dimethyl sulfoxide (DMSO). Compound 4BGIPN was characterized by high-resolution mass spectrometry (HRMS), elemental analysis

• particular isomer that could show superior photophysical TADF characteristics important for fabricating TADF OLED devices with improved operating stability. Experimental General considerations All reactions were performed under a N2 atmosphere. Solvents were dried as required. Sodium hydride was washed from

Mechanochemical solid state synthesis of copper(I)/NHC complexes with K₃PO₄

• Ina Remy-Speckmann,
• Birte M. Zimmermann,
• Mahadeb Gorai,
• Martin Lerch and
• Johannes F. Teichert

Beilstein J. Org. Chem. 2023, 19, 440–447, doi:10.3762/bjoc.19.34

• during the milling process lead to agglutination of the remaining solids and therefore insufficient homogenization of the reaction mixture. This gave a mixture of compounds, in which the envisaged complex 5 could not be identified. A different approach was made using sodium hydride as a base (Table 1

A study of the DIBAL-promoted selective debenzylation of α-cyclodextrin protected with two different benzyl groups

• Naser-Abdul Yousefi,
• Morten L. Zimmermann and
• Mikael Bols

Beilstein J. Org. Chem. 2022, 18, 1553–1559, doi:10.3762/bjoc.18.165

• temperature control during the acetolysis step. The silylation method requires careful drying of 1 before the silylation but is otherwise experimentally simple. Hexol 6 was then DCB-protected using 2,4-dichlorobenzyl chloride and sodium hydride in DMSO. As self-condensation of the alkylating agent is possible

One-pot synthesis of 2-arylated and 2-alkylated benzoxazoles and benzimidazoles based on triphenylbismuth dichloride-promoted desulfurization of thioamides

• Arisu Koyanagi,
• Yuki Murata,
• Shiori Hayakawa,
• Mio Matsumura and
• Shuji Yasuike

Beilstein J. Org. Chem. 2022, 18, 1479–1487, doi:10.3762/bjoc.18.155

• reaction of o-alkoxythiobenzamides with iodine in the presence of sodium hydride as the base [11]. Sugita et al. reported an unstable iodoalkyne, pentafluoro(iodoethynyl)benzene, which catalyzed the cyclization of thioamides with 2-aminophenol [12]. These approaches have some drawbacks, such as low yields

Synthetic strategies for the preparation of γ-phostams: 1,2-azaphospholidine 2-oxides and 1,2-azaphospholine 2-oxides

• Jiaxi Xu

Beilstein J. Org. Chem. 2022, 18, 889–915, doi:10.3762/bjoc.18.90

• presence of sodium hydride in dioxane, affording tricyclic γ-phosphonolactams 74, 78, and 81 in low to moderate yields (Scheme 14) [34]. In 2005, Aladzheva and co-workers prepared γ-phosphonolactams 85 from the substitution of ethyl 2-(3-chloropropyl)aminoalkanoates 82 derived from glycine and ᴅʟ-alanine

Efficient N-arylation of 4-chloroquinazolines en route to novel 4-anilinoquinazolines as potential anticancer agents

• Rodolfo H. V. Nishimura,
• Thiago dos Santos,
• Valter E. Murie,
• Luciana C. Furtado,
• Leticia V. Costa-Lotufo and
• Giuliano C. Clososki

Beilstein J. Org. Chem. 2021, 17, 2968–2975, doi:10.3762/bjoc.17.206

• we used 2-fluoroaniline (14b), we obtained derivatives 15c and 15d in 60 and 56% yields, respectively, after heating for 40 min (Scheme 4). Then, the derivatives 15a–d were efficiently N-methylated with iodomethane in the presence of sodium hydride, to afford the corresponding methylated 4

Strategies for the synthesis of brevipolides

• Yudhi D. Kurniawan and
• A'liyatur Rosyidah

Beilstein J. Org. Chem. 2021, 17, 2399–2416, doi:10.3762/bjoc.17.157

• treated with an acid to remove the isopropylidene protection and induce intramolecular cyclization to the 2’,5’-syn-furan 109 in 80% yield. This triol was subjected to excess sodium hydride and tosylating agent, and the mixture was allowed to react for 90 minutes, after which benzyl bromide was added to

Preparation of mono-substituted malonic acid half oxyesters (SMAHOs)

• Tania Xavier,
• Sylvie Condon,
• Christophe Pichon,
• Erwan Le Gall and
• Marc Presset

Beilstein J. Org. Chem. 2021, 17, 2085–2094, doi:10.3762/bjoc.17.135

• amount of sodium hydride (Table 1). Using a 1:1:1 mixture of 1b/2d/NaH in DMF (c = 1.0 M) at rt, the desired monoalkylated product 3bd was isolated in 55% yield (Table 1, entry 1). By studying the stoichiometry of the reaction, we found easier to use a slight excess of the malonate to reduce the amount

Regioselective N-alkylation of the 1H-indazole scaffold; ring substituent and N-alkylating reagent effects on regioisomeric distribution

• Ryan M. Alam and
• John J. Keating

Beilstein J. Org. Chem. 2021, 17, 1939–1951, doi:10.3762/bjoc.17.127

• alkylindazoles. Initial screening of various conditions revealed that the combination of sodium hydride (NaH) in tetrahydrofuran (THF) (in the presence of an alkyl bromide), represented a promising system for N-1 selective indazole alkylation. For example, among fourteen C-3 substituted indazoles examined, we

• electrophiles, while maintaining a high degree of N-1 regioselectivity. Keywords: indazole; N-alkylation; regioselective; sodium hydride; tetrahydrofuran; Introduction Indazole (benzo[c]pyrazole) is an aromatic bicyclic heterocycle and can be viewed as a (bio)isostere of indole [1]. While only a few naturally

• temperature increased from room temperature (≈ 20 °C) to 50 °C (Table 1, entry 21). It was found that the latter variation facilitated the complete consumption of 9 with negligible effect on the regiochemical outcome of the reaction. Gratifyingly, sodium hydride (NaH) demonstrated excellent N-1

Double-headed nucleosides: Synthesis and applications

• Vineet Verma,
• Jyotirmoy Maity,
• Vipin K. Maikhuri,
• Ritika Sharma,
• Himal K. Ganguly and
• Ashok K. Prasad

Beilstein J. Org. Chem. 2021, 17, 1392–1439, doi:10.3762/bjoc.17.98

• -ribofuranose (30) [48]. The ribose derivative 30 was then reacted with triflic anhydride in the presence of pyridine followed by reaction with adenine in the presence of sodium hydride to afford nucleoside 34. The nucleoside 34 was further reacted with benzoyl chloride to afford the fully protected nucleoside

Design, synthesis and photophysical properties of novel star-shaped truxene-based heterocycles utilizing ring-closing metathesis, Clauson–Kaas, Van Leusen and Ullmann-type reactions as key tools

• Shakeel Alvi and
• Rashid Ali

Beilstein J. Org. Chem. 2021, 17, 1374–1384, doi:10.3762/bjoc.17.96

• −1; MS (m/z): 724.66. Synthesis of N2,N2,N7,N7,N12,N12-hexaallyl-5,5,10,10,15,15-hexabutyl-10,15-dihydro-5H-diindeno[1,2-a:1',2'-c]fluorene-2,7,12-triamine (3): To a suspension of sodium hydride (132 mg, 5.52 mmol) in dry DMF (5 mL), was added triamine derivative 4 (500 mg, 0.69 mmol) in DMF (5 mL

Beyond ribose and phosphate: Selected nucleic acid modifications for structure–function investigations and therapeutic applications

• Christopher Liczner,
• Kieran Duke,
• Gabrielle Juneau,
• Martin Egli and
• Christopher J. Wilds

Beilstein J. Org. Chem. 2021, 17, 908–931, doi:10.3762/bjoc.17.76

• product is then reacted with unprotected thymine which, in the presence of stoichiometric amounts of sodium hydride, results in the epoxide ring opening and the formation of the glycol backbone. The pre-amidite is then phosphitylated yielding the desired GNA-T amidite (Scheme 3). Recently, this simple

Synthesis of aryl 2-bromo-2-chloro-1,1-difluoroethyl ethers through the base-mediated reaction between phenols and halothane

• Yukiko Karuo,
• Ayaka Kametani,
• Atsushi Tarui,
• Kazuyuki Sato,
• Kentaro Kawai and
• Masaaki Omote

Beilstein J. Org. Chem. 2021, 17, 89–96, doi:10.3762/bjoc.17.9

• functionalized aryl 2-bromo-2-chloro-1,1-difluoroethyl ethers as well as several considerations of the reaction mechanism. Results and Discussion We began our study to optimize the reaction conditions (Table 1). When two equivalents of halothane and sodium hydride (NaH) were treated with phenol (1a) at room

Progress in the total synthesis of inthomycins

• Bidyut Kumar Senapati

Beilstein J. Org. Chem. 2021, 17, 58–82, doi:10.3762/bjoc.17.7

• bromine in acetic acid, and then triethyl phosphite. Next, compound 28 was treated with sodium hydride followed by aldehyde 29 [37] to give (E,E)-dienyl stannane 30 in 50% yield. The key Stille coupling between 30 and vinyl iodide 31, prepared by Takai reaction [38] of phenylacetaldehyde, in presence of

All-carbon [3 + 2] cycloaddition in natural product synthesis

• Zhuo Wang and
• Junyang Liu

Beilstein J. Org. Chem. 2020, 16, 3015–3031, doi:10.3762/bjoc.16.251

• triquinane (±)-hirsutene (14) [24] (Scheme 1D). In 2011, the same research group used allenyl diazo compound 38, which was generated from the reaction between aldehyde 37 and p-toluenesulfonehydrazide in the presence of sodium hydride upon heating, to produce diyl 40 [29] (Scheme 2A). The intramolecular

• 2014 and 2017, respectively (Scheme 2B and Scheme 2C). The synthesis of (−)-crinipellin A (15) began with the treatment of hydrazone 42 with sodium hydride under reflux to produce the tetraquinane 46 in 87% yield [30] (Scheme 2B). The authors suggested that the diazo compound 43 formed undergoes an

• upon refluxing in toluene and subsequent epoxidation afforded 51 [32], which was converted to (−)-crinipelline A (15) in two steps. The synthesis of waihoensene (16) commenced with the conversion of aldehyde 52a to the corresponding hydrazone 52b, which was treated with sodium hydride under reflux to

Bifurcated synthesis of methylene-lactone- and methylene-lactam-fused spirolactams via electrophilic amide allylation of γ-phenylthio-functionalized γ-lactams

• Tetsuya Sengoku,
• Koki Makino,
• Ayumi Iijima,
• Toshiyasu Inuzuka and
• Hidemi Yoda

Beilstein J. Org. Chem. 2020, 16, 2769–2775, doi:10.3762/bjoc.16.227

• such as potassium tert-butoxide or sodium hydride resulted in no formation of the desired product 3a because 2a was decomposed under the harsh reaction conditions (Table 1, entries 2 and 3). Thus we opted to employ another substrate 2b bearing a phenylthio group which polarizes the α-C–H bond to lead

• sodium hydride, affording the corresponding adduct in 50% and 81% yields, respectively (Table 1, entries 6 and 7). Surprisingly, the desired allylation underwent even in the absence of palladium catalyst, probably due to high nucleophilicity of the deprotonated intermediate, to give 3b in 87% yield

• (Table 1, entry 8). Optimization studies were conducted by screening solvents, reagent amount, and reaction temperature, showing that 3b was produced in the highest yield of 97% when the reaction was carried out with 2.5 equivalents of sodium hydride in THF at −10 °C (Table 1, entries 9–13) [22]. With

Selective recognition of ATP by multivalent nano-assemblies of bisimidazolium amphiphiles through “turn-on” fluorescence response

• Rakesh Biswas,
• Surya Ghosh,
• Shubhra Kanti Bhaumik and
• Supratim Banerjee

Beilstein J. Org. Chem. 2020, 16, 2728–2738, doi:10.3762/bjoc.16.223

• the nucleotides, 1-pyrenecarboxaldehyde, sodium borohydride, sodium hydride, phosphorus tribromide and 1-bromobutane, 1-bromodecane, 1-bromododecane and 1-bromotetradecane were purchased from Sigma-Aldrich. Imidazole, dibromomethane and tris(hydroxymethyl)aminomethane were purchased from TCI chemicals

Access to highly substituted oxazoles by the reaction of α-azidochalcone with potassium thiocyanate

• Mysore Bhyrappa Harisha,
• Pandi Dhanalakshmi,
• Rajendran Suresh,
• Raju Ranjith Kumar and
• Shanmugam Muthusubramanian

Beilstein J. Org. Chem. 2020, 16, 2108–2118, doi:10.3762/bjoc.16.178

• in 3d proceeded smoothly with acetyl chloride in the presence of sodium hydride to afford 5 in good yield. The structure of the product and the site of acetylation was confirmed by X-ray crystallography of a single crystal of 5 [71] (Figure 3). The methylated and benzylated derivatives 6 and 7 were

Stereoselective Biginelli-like reaction catalyzed by a chiral phosphoric acid bearing two hydroxy groups

• Xiaoyun Hu,
• Jianxin Guo,
• Cui Wang,
• Rui Zhang and
• Victor Borovkov

Beilstein J. Org. Chem. 2020, 16, 1875–1880, doi:10.3762/bjoc.16.155

• ), sodium hydride (0.105 g, 4.2 mmol), and dried THF (16 mL). The mixture was stirred at rt for 2 h, and then methyl iodide (0.61 g, 4.3 mmol) was added and the mixture stirred at rt for 6 h. Then, distilled water (12 mL) and diethyl ether (15 mL) were added, the organic phase was separated, dried, and

Facile synthesis of 7-alkyl-1,2,3,4-tetrahydro-1,8-naphthyridines as arginine mimetics using a Horner–Wadsworth–Emmons-based approach

• Rhys A. Lippa,
• John A. Murphy and
• Tim N. Barrett

Beilstein J. Org. Chem. 2020, 16, 1617–1626, doi:10.3762/bjoc.16.134

• (1.5–2.4 equiv) and proceeded in <1 h. Sodium hydride was investigated as a heterogeneous alternative to potassium tert-butoxide, although a lower isolated yield of the final amine was obtained. All amines were formed in high NMR and LC–MS purity without the need for purification by column

Recent synthesis of thietanes

• Jiaxi Xu

Beilstein J. Org. Chem. 2020, 16, 1357–1410, doi:10.3762/bjoc.16.116

• [22] (Scheme 93). The reaction mechanism was proposed as following. The treatment of trimethyloxosulfonium iodide (424) with sodium hydride generated dimethyloxosulfonium methylide (426) as the one carbon-containing nucleophile with DMSO (379) as a good leaving group. The nucleophilic attack of 426 on